Single-cell Analysis / Python package
CellRank
Estimate candidate cell-state transitions and fate probabilities from processed single-cell observations.
Best fit
Researchers who want to examine a possible differentiation trajectory and compare modeling assumptions.
What you need
A Python environment, an AnnData object, and the inputs required by the chosen transition model.
What to check
Inferred transitions are model outputs. They do not establish lineage relationships without independent evidence.