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Single-cell Analysis / R / Shiny app

iSEE

Explore a prepared experiment in a browser with linked scatter plots, metadata tables, and expression views.

Best fit

Analysts who want collaborators to inspect an existing dataset interactively.

What you need

R, Bioconductor, Shiny, and a SummarizedExperiment or SingleCellExperiment object.

What to check

Prepare the data and any embeddings in advance. A shared deployment also needs hosting and appropriate access controls.