Single-cell Analysis / R package
scater
Inspect single-cell expression data with quality-control summaries, embeddings, and plots built around Bioconductor objects.
Best fit
R analysts who want to understand data quality before they cluster cells or compare samples.
What you need
R, a matching Bioconductor release, and a single-cell expression object with relevant metadata.
What to check
Quality plots help diagnose outliers, but thresholds must be justified for the assay and sample set.