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Single-cell Analysis / R package

scDblFinder

Flag likely doublets, where a capture event contains more than one cell, before downstream interpretation.

Best fit

Analysts assessing data quality in droplet-based single-cell datasets.

What you need

R and Bioconductor, an appropriate count matrix, and capture information for pooled datasets.

What to check

Calls are estimates and can miss doublets made up of similar cells. Inspect the flags alongside other quality evidence.